Genomic Feature and Variation Ontology (GFVO)

Ontology Info

Field	Value
Acronyme	GFVO
Description	The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data using JSON (JSON-LD). It is captures the contents of data files that adhere to the Generic Feature Format Version 3 (GFF3, http://www.sequenceontology.org/resources/gff3.html), the General Transfer Format (GTF, http://mblab.wustl.edu/GTF22.html), the Genome Variation Format Version 1 (GVF, http://www.sequenceontology.org/resources/gvf.html), and the Variant Call Format (VCF, http://vcftools.sourceforge.net/specs.html), as well as the FASTA format (http://en.wikipedia.org/wiki/FASTA_format). The creation of the ontology was inspired by previous work of Robert Hoehndorf on RDF2OWL (http://code.google.com/p/rdf2owl).<br><br>NOTE: GFVO in BioPortal is a simplified version without ontology imports and having class/property equivalences removed. The full ontology is available at: http://www.biointerchange.org/gfvo
Format	OWL
Categories	Genomic and Proteomic, Biomedical Resources, Biological Process, Human, Gene Product
Groups

Metric	Value
Classes	102
Individuals	0
Properties	33
Max Depth	6
Max Child Count	8
Average Child Count	2
Classes With One Child	13
Classes With More Than 25 Children	0
Classes With No Definition	0