# Suggested Ontology for Pharmacogenomics (SOPHARM)

> SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL,...

- Page: https://library.schematica.io/model/024f814dfadd497a9997fe34292d7a96
- Model type: Ontology
- License: CC BY 4.0
- Access type: Academic
- Access method: Download
- Model size: Small
- Formats: OWL
- Domains: Healthcare
- Audiences: Researcher
- External link: https://bioportal.bioontology.org/ontologies/SOPHARM
- Contact: Adrien Coulet (adrien.coulet@loria.fr)
- Listed in library: 2025-06-12
- Last updated: 2025-09-10

## Description

## Ontology Info

| Field | Value |
|-------|-------|
| Acronyme | SOPHARM |
| Description | SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains. |
| Format | OWL |
| Categories | Genomic and Proteomic |
| Groups |  |

## Metrics

| Metric | Value |
|--------|-------|
| Classes | 117 |
| Individuals | 17 |
| Properties | 61 |
| Max Depth | 4 |
| Max Child Count | 51 |
| Average Child Count | 2 |
| Classes With One Child | 26 |
| Classes With More Than 25 Children | 1 |
| Classes With No Definition | 47 |

## Projects using SOPHARM

- [PractiKPharma](https://bioportal.bioontology.org/projects/PractiKPharma)

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Source: https://library.schematica.io/model/024f814dfadd497a9997fe34292d7a96