Suggested Ontology for Pharmacogenomics (SOPHARM)

Ontology Info

Field	Value
Acronyme	SOPHARM
Description	SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.
Format	OWL
Categories	Genomic and Proteomic
Groups

Metric	Value
Classes	117
Individuals	17
Properties	61
Max Depth	4
Max Child Count	51
Average Child Count	2
Classes With One Child	26
Classes With More Than 25 Children	1
Classes With No Definition	47